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Kuroda T, Yasuda S, Matsuyama S, Miura T, Sawada R, Matsuyama A, Yamamoto Y, Morioka MS, Kawaji H, Kasukawa T, Itoh M, Akutsu H, Kawai J, Sato Y.
ROR2 expression predicts human induced pluripotent stem cell differentiation into neural stem/progenitor cells and GABAergic neurons.
Sci Rep
2024
14(1):690
PubMed ID: 38184695
DOI: 10.1038/s41598-023-51082-4
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21673
Osaki T, Duenki T, Chow SYA, Ikegami Y, Beaubois R, Levi T, Nakagawa-Tamagawa N, Hirano Y, Ikeuchi Y.
Complex activity and short-term plasticity of human cerebral organoids reciprocally connected with axons.
Nat Commun
2024
15(1):2945
PubMed ID: 38600094
DOI: 10.1038/s41467-024-46787-7
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21811
Zenk F, Fleck JS, Jansen SMJ, Kashanian B, Eisinger B, Santel M, Dupré JS, Camp JG, Treutlein B.
Single-cell epigenomic reconstruction of developmental trajectories from pluripotency in human neural organoid systems.
Nat Neurosci
2024
PubMed ID: 38914828
DOI: 10.1038/s41593-024-01652-0
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21955
Tomuro K, Mito M, Toh H, Kawamoto N, Miyake T, Chow SYA, Doi M, Ikeuchi Y, Shichino Y, Iwasaki S.
Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts.
Nat Commun
2024
15(1):7061
PubMed ID: 39187487
DOI: 10.1038/s41467-024-51258-0
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22087
Niwa R, Matsumoto T, Liu AY, Kawato M, Kondo T, Tsukita K, Gee P, Inoue H, Maurissen TL, Woltjen K.
Enrichment of Allelic Editing Outcomes by Prime Editing in Induced Pluripotent Stem Cells.
CRISPR J
2024
7(5):293-304
PubMed ID: 39436282
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19744
Azuma N, Yokoi T, Tanaka T, Matsuzaka E, Saida Y, Nishina S, Terao M, Takada S, Fukami M, Okamura K, Maehara K, Yamasaki T, Hirayama J, Nishina H, Handa H, Yamaguchi Y.
Integrator complex subunit 15 controls mRNA splicing and is critical for eye development
Hum Mol Genet
2023
32(12):2032-2045
PubMed ID: 36851842
DOI: 10.1093/hmg/ddad034
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19819
Zhang D, Eguchi N, Okazaki S, Sora I, Hishimoto A.
Telencephalon Organoids Derived from an Individual with ADHD Show Altered Neurodevelopment of Early Cortical Layer Structure
Stem Cell Rev Rep
2023
19(5):1482-1491
PubMed ID: 36872412
DOI: 10.1007/s12015-023-10519-z
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17483
Nakatsu D, Kunishige R, Taguchi Y, Shinozaki-Narikawa N, Osaka K, Yokomizo K, Ishida M, Takei S, Yamasaki S, Hagiya K, Hattori K, Tsukamoto T, Murata M, Kano F.
BMP4-SMAD1/5/9-RUNX2 pathway activation inhibits neurogenesis and oligodendrogenesis in Alzheimer's patients' iPSCs in senescence-related conditions
Stem Cell Reports
2023
18(3):688-705
PubMed ID: 36764297
DOI: 10.1016/j.stemcr.2023.01.004
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21125
Togo H, Terada K, Ujitsugu A, Hirose Y, Takeuchi H, Kusunoki M.
Fabrication Scaffold with High Dimensional Control for Spheroids with Undifferentiated iPS Cell Properties.
Cells
2023
12(2)
PubMed ID: 36672213
DOI: 10.3390/cells12020278
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21170
Kawamata M, Suzuki HI, Kimura R, Suzuki A.
Optimization of Cas9 activity through the addition of cytosine extensions to single-guide RNAs.
Nat Biomed Eng
2023
PubMed ID: 37037965
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21329
Riesenberg S, Kanis P, Macak D, Wollny D, Düsterhöft D, Kowalewski J, Helmbrecht N, Maricic T, Pääbo S.
Efficient high-precision homology-directed repair-dependent genome editing by HDRobust.
Nat Methods
2023
PubMed ID: 37474806
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21371
Bressan C, Snapyan M, Snapyan M, Klaus J, di Matteo F, Robertson SP, Treutlein B, Parent M, Cappello S, Saghatelyan A.
Metformin rescues migratory deficits of cells derived from patients with periventricular heterotopia.
EMBO Mol Med
2023
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21439
Terada E, Bamba Y, Takagaki M, Kawabata S, Tachi T, Nakamura H, Nishida T, Kishima H.
Silicate Microfiber Scaffolds Support the Formation and Expansion of the Cortical Neuronal Layer of Cerebral Organoids With a Sheet-Like Configuration.
Stem Cells Transl Med
2023
PubMed ID: 37843388
DOI: 10.1093/stcltm/szad066
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17541
He Z, Maynard A, Jain A, Gerber T, Petri R, Lin HC, Santel M, Ly K, Dupré JS, Sidow L, Sanchis Calleja F, Jansen SMJ, Riesenberg S, Camp JG, Treutlein B.
Lineage recording in human cerebral organoids
Nat Methods
2022
19(1):90-99
PubMed ID: 34969984
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17579
Hirata M, Ichiyanagi T, Katoh H, Hashimoto T, Suzuki H, Nitta H, Kawase M, Nakai R, Imamura M, Ichiyanagi K.
Sequence divergence and retrotransposon insertion underlie interspecific epigenetic differences in primates
Mol Biol Evol
2022
39(10):msac208
PubMed ID: 36219870
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20238
Linda K, Lewerissa EI, Verboven AHA, Gabriele M, Frega M, Klein Gunnewiek TM, Devilee L, Ulferts E, Hommersom M, Oudakker A, Schoenmaker C, van Bokhoven H, Schubert D, Testa G, Koolen DA, de Vries BBA, Nadif Kasri N.
Imbalanced autophagy causes synaptic deficits in a human model for neurodevelopmental disorders.
Autophagy
2022
1-20
PubMed ID: 34286667
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Song D, Takahashi G, Zheng YW, Matsuo-Takasaki M, Li J, Takami M, An Y, Hemmi Y, Miharada N, Fujioka T, Noguchi M, Nakajima T, Saito MK, Nakamura Y, Oda T, Miyaoka Y, Hayashi Y.
Retinoids rescue ceruloplasmin secretion and alleviate oxidative stress in Wilson's disease-specific hepatocytes
Hum Mol Genet
2022
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PubMed ID: 35388883
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Cruceanu C, Dony L, Krontira AC, Fischer DS, Roeh S, Di Giaimo R, Kyrousi C, Kaspar L, Arloth J, Czamara D, Gerstner N, Martinelli S, Wehner S, Breen MS, Koedel M, Sauer S, Sportelli V, Rex-Haffner M, Cappello S, Theis FJ, Binder EB.
Cell-Type-Specific Impact of Glucocorticoid Receptor Activation on the Developing Brain: A Cerebral Organoid Study
Am J Psychiatry
2022
179(5):375-387
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Chow SYA, Nakayama K, Osaki T, Sugiyama M, Yamada M, Takeuchi H, Ikeuchi Y.
Human sensory neurons modulate melanocytes through secretion of RGMB.
Cell Rep
2022
40(12):111366
PubMed ID: 36130522
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Okawa R, Sogawa K, Shiozaki M, Yachiku K, Miura T, Shibata T, Ezoe S.
The effects of continuous exposure to low-dose chlorine dioxide gas on the characteristics of induced pluripotent stem cells.
Regen Ther
2022
21:250-257
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Fleck JS, Jansen SMJ, Wollny D, Zenk F, Seimiya M, Jain A, Okamoto R, Santel M, He Z, Camp JG, Treutlein B.
Inferring and perturbing cell fate regulomes in human brain organoids.
Nature
2022
PubMed ID: 36198796
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Yoshida S, Kato TM, Sato Y, Umekage M, Ichisaka T, Tsukahara M, Takasu N, Yamanaka S.
A clinical-grade HLA haplobank of human induced pluripotent stem cells matching approximately 40% of the Japanese population.
Med (N Y)
2022
PubMed ID: 36395757
DOI: 10.1016/j.medj.2022.10.003
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Polla DL, Farazi Fard MA, Tabatabaei Z, Habibzadeh P, Levchenko OA, Nikuei P, Makrythanasis P, Hussain M, von Hardenberg S, Zeinali S, Fallah MS, Schuurs-Hoeijmakers JHM, Shahzad M, Fatima F, Fatima N, Kaat LD, Bruggenwirth HT, Fleming LR, Condie J, Ploski R, Pollak A, Pilch J, Demina NA, Chukhrova AL, Sergeeva VS, Venselaar H, Masri AT, Hamamy H, Santoni FA, Linda K, Ahmed ZM, Nadif Kasri N, de Brouwer APM, Bergmann AK, Hethey S, Yavarian M, Ansar M, Riazuddin S, Riazuddin S, Silawi M, Ruggeri G, Pirozzi F, Eftekhar E, Taghipour Sheshdeh A, Bahramjahan S, Mirzaa GM, Lavrov AV, Antonarakis SE, Faghihi MA, van Bokhoven H.
Biallelic variants in TMEM222 cause a new autosomal recessive neurodevelopmental disorder
Genet Med
2021
23(7):1246-1254
PubMed ID: 33824500
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Fukusumi H, Togo K, Sumida M, Nakamori M, Obika S, Baba K, Shofuda T, Ito D, Okano H, Mochizuki H, Kanemura Y.
Alpha-synuclein dynamics in induced pluripotent stem cell-derived dopaminergic neurons from a Parkinson's disease patient (PARK4) with SNCA triplication.
FEBS Open Bio
2021
11(2):354-366
PubMed ID: 33301617
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20014
Matsuo M, Nadanaka S, Soga M, Sugiyama T, Serigano S, Shimano K, Ichinose F, Nakamura T, Maeda T, Houkin K, Era T, Kitagawa H.
Vulnerability to shear stress caused by altered peri-endothelial matrix is a key feature of Moyamoya disease.
Sci Rep
2021
11(1):1552
PubMed ID: 33452387
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Sato M, Inohaya A, Yasuda E, Mogami H, Chigusa Y, Kawasaki K, Kawamura Y, Ueda Y, Takai H, Mandai M, Kondoh E.
Three-dimensional human placenta-like bud synthesized from induced pluripotent stem cells
Sci Rep
2021
11(1):14167
PubMed ID: 34239021
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Lin HC, He Z, Ebert S, Schörnig M, Santel M, Nikolova MT, Weigert A, Hevers W, Kasri NN, Taverna E, Camp JG, Treutlein B.
NGN2 induces diverse neuron types from human pluripotency.
Stem Cell Reports
2021
PubMed ID: 34358451
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Koike H, Iwasawa K, Ouchi R, Maezawa M, Kimura M, Kodaka A, Nishii S, Thompson WL, Takebe T.
Engineering human hepato-biliary-pancreatic organoids from pluripotent stem cells
Nat Protoc
2021
16(2):919-936
PubMed ID: 33432231
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Abe T, Uosaki H, Shibata H, Hara H, Sarentonglaga B, Nagao Y, Hanazono Y.
Fetal sheep support the development of hematopoietic cells in vivo from human induced pluripotent stem cells
Exp Hematol
2021
95:46-57.e8
PubMed ID: 33395577
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20366
Hisatsune C, Shimada T, Miyamoto A, Lee A, Yamagata K.
Tuberous Sclerosis Complex (TSC) Inactivation Increases Neuronal Network Activity by Enhancing Ca2+ Influx via L-Type Ca2+ Channels.
J Neurosci
2021
41(39):8134-8149
PubMed ID: 34417327
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Vita Stepanova, Kaja Ewa Moczulska, Guido N Vacano, Ilia Kurochkin, Xiangchun Ju, Stephan Riesenberg, Dominik Macak, Tomislav Maricic, Linda Dombrowski, Maria Schörnig, Konstantinos Anastassiadis, Oliver Baker, Ronald Naumann, Ekaterina Khrameeva, Anna Vanushkina, Elena Stekolshchikova, Alina Egorova, Anna Tkachev, Randall Mazzarino, Nathan Duval, Dmitri Zubkov, Patrick Giavalisco, Terry G Wilkinson, David Patterson, Philipp Khaitovich, Svante Pääbo
Reduced purine biosynthesis in humans after their divergence from Neandertals
eLife
2021
10:2021-5-4
PubMed ID: 33942714
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15899
Kashiwagi K, Shichino Y, Osaki T, Sakamoto A, Nishimoto M, Takahashi M, Mito M, Weber F, Ikeuchi Y, Iwasaki S, Ito T.
eIF2B-capturing viral protein NSs suppresses the integrated stress response
Nat Commun
2021
12(1):7102
PubMed ID: 34876589
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Tadokoro S, Tokuyama-Toda R, Tatehara S, Ide S, Umeki H, Miyoshi K, Noma T, Satomura K.
A New Induction Method for the Controlled Differentiation of Human-Induced Pluripotent Stem Cells Using Frozen Sections.
Cells
2021
10(11)
PubMed ID: 34831050
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Kasai T, Suga H, Sakakibara M, Ozone C, Matsumoto R, Kano M, Mitsumoto K, Ogawa K, Kodani Y, Nagasaki H, Inoshita N, Sugiyama M, Onoue T, Tsunekawa T, Ito Y, Takagi H, Hagiwara D, Iwama S, Goto M, Banno R, Takahashi J, Arima H.
Hypothalamic Contribution to Pituitary Functions Is Recapitulated In Vitro Using 3D-Cultured Human iPS Cells.
Cell Rep
2020
30(1):18-24
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Tomoyo Sawada, Thomas E Chater, Yohei Sasagawa, Mika Yoshimura, Noriko Fujimori-Tonou, Kaori Tanaka, Kynon J M Benjamin, Apuã C M Paquola, Jennifer A Erwin, Yukiko Goda, Itoshi Nikaido, Tadafumi Kato
Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids
Mol Psychiatry
2020
25(11):2695-2711
PubMed ID: 32764691
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Dayem AA, Won J, Goo HG, Yang GM, Seo DS, Jeon BM, Choi HY, Park SE, Lim KM, Jang SH, Lee SB, Choi SB, Kim K, Kang GH, Yeon GB, Kim DS, Cho SG.
The immobilization of fibronectin- and fibroblast growth factor 2-derived peptides on a culture plate supports the attachment and proliferation of human pluripotent stem cells.
Stem Cell Res
2020
PubMed ID: 31981882
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Misawa R, Minami T, Okamoto A, Ikeuchi Y.
A Light-Inducible Hedgehog Signaling Activator Modulates Proliferation and Differentiation of Neural Cells.
ACS Chem Biol
2020
PubMed ID: 32343549
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Maurissen TL, Woltjen K.
Synergistic gene editing in human iPS cells via cell cycle and DNA repair modulation.
Nat Commun
2020
PubMed ID: 32513994
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Yokouchi Y, Suzuki S, Ohtsuki N, Yamamoto K, Noguchi S, Soejima Y, Goto M, Ishioka K, Nakamura I, Suzuki S, Takenoshita S, Era T.
Rapid repair of human disease-specific single-nucleotide variants by One-SHOT genome editing.
Sci Rep
2020
PubMed ID: 32811847
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Sim H, Seo JH, Kim J, Oh M, Lee JE, Baek A, Lee SY, Chung SK, Son MY, Chae JI, Jeon YJ, Kim J.
Quantitative Proteomic Analysis of Primitive Neural Stem Cells from LRRK2 G2019S-Associated Parkinson's Disease Patient-Derived iPSCs.
Life (Basel)
2020
PubMed ID: 33297425
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Ayo-Martin AC, Kyrousi C, Di Giaimo R, Cappello S.
GNG5 Controls the Number of Apical and Basal Progenitors and Alters Neuronal Migration During Cortical Development
Front Mol Biosci
2020
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Krieger TG, Tirier SM, Park J, Jechow K, Eisemann T, Peterziel H, Angel P, Eils R, Conrad C.
Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics
Neuro Oncol
2020
22(8):1138-1149
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Kotaro Tsuboyama, Tatsuya Osaki, Eriko Matsuura-Suzuki, Hiroko Kozuka-Hata, Yuki Okada, Masaaki Oyama, Yoshiho Ikeuchi, Shintaro Iwasaki, Yukihide Tomari
A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation
PLoS Biol
2020
18(3):e3000632
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Osman A, Oze M, Afify SM, Hassan G, El-Ghlban S, Nawara HM, Fu X, Zahra MH, Seno A, Winer I, Salomon DS, Seno M.
Tumor-associated macrophages derived from cancer stem cells
Acta Histochem
2020
122(8):151628
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Ueda M, Hashimoto Y, Honda Y, Baba S, Morita S.
Comparison of the characteristics of mesenchymal stem-like cells derived by integration-free induced pluripotent stem cells in different single-cell culture media under feeder-free conditions.
Med Mol Morphol
2019
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Kuroda T, Yasuda S, Tachi S, Matsuyama S, Kusakawa S, Tano K, Miura T, Matsuyama A, Sato Y.
SALL3 expression balance underlies lineage biases in human induced pluripotent stem cell differentiation.
Nat Commun
2019
10(1):2175
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Kirihara T, Luo Z, Chow SYA, Misawa R, Kawada J, Shibata S, Khoyratee F, Vollette CA, Volz V, Levi T, Fujii T, Ikeuchi Y.
A Human Induced Pluripotent Stem Cell-Derived Tissue Model of a Cerebral Tract Connecting Two Cortical Regions.
iScience
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PubMed ID: 31006610
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Komatsu Y, Takeuchi D, Tokunaga T, Sakurai H, Makino A, Honda T, Ikeda Y, Tomonaga K.
RNA Virus-Based Episomal Vector with a Fail-Safe Switch Facilitating Efficient Genetic Modification and Differentiation of iPSCs.
Mol Ther Methods Clin Dev
2019
14:47-55
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Aoki H, Yamashita M, Hashita T, Nakayama M, Yagi M, Iwao T, Matsunaga T.
Isolation of induced pluripotent stem cell-derived endothelial progenitor cells from sac-like structures.
Biochem. Biophys. Res. Commun.
2019
515(4):672-678
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Riesenberg S, Chintalapati M, Macak D, Kanis P, Maricic T, Pääbo S.
Simultaneous precise editing of multiple genes in human cells.
Nucleic Acids Res.
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Kanton S, Boyle MJ, He Z, Santel M, Weigert A, Sanchís-Calleja F, Guijarro P, Sidow L, Fleck JS, Han D, Qian Z, Heide M, Huttner WB, Khaitovich P, Pääbo S, Treutlein B, Camp JG.
Organoid single-cell genomic atlas uncovers human-specific features of brain development.
Nature
2019
PubMed ID: 31619793
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Yuki Maeda, Keiichi Motoyama, Taishi Higashi, Risako Onodera, Toru Takeo, Naomi Nakagata, Yuki Kurauchi, Hiroshi Katsuki, Yoichi Ishitsuka, Yuki Kondo, Tetsumi Irie, Takumi Era, Hidetoshi Arima
Lowering effect of dimethyl-α-cyclodextrin on GM1-ganglioside accumulation in GM1-gangliosidosis model cells and in brain of β-galactosidase-knockout mice
Journal of Inclusion Phenomena and Macrocyclic Chemistry
2019
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Kimura Y, Shofuda T, Higuchi Y, Nagamori I, Oda M, Nakamori M, Onodera M, Kanematsu D, Yamamoto A, Katsuma A, Suemizu H, Nakano T, Kanemura Y, Mochizuki H.
Human Genomic Safe Harbors and the Suicide Gene-Based Safeguard System for iPSC-Based Cell Therapy
Stem Cells Transl Med
2019
8(7):627-638
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Efficient differentiation of human pluripotent stem cells into skeletal muscle cells by combining RNA-based MYOD1-expression and POU5F1-silencing.
Sci Rep
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Sato-Nishiuchi R, Li S, Ebisu F, Sekiguchi K.
Recombinant laminin fragments endowed with collagen-binding activity: A tool for conferring laminin-like cell-adhesive activity to collagen matrices.
Matrix Biol.
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Tumorigenicity-associated characteristics of human iPS cell lines.
PLoS ONE
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Approach for differentiating trophoblast cell lineage from human induced pluripotent stem cells with retinoic acid in the absence of bone morphogenetic protein 4.
Placenta
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Yoshinori Hasegawa, Masashi Ikeno, Nobutaka Suzuki, Manabu Nakayama, Osamu Ohara
Improving the efficiency of gene insertion in a human artificial chromosome vector and its transfer in human-induced pluripotent stem cells
Biology Methods and Protocols
2018
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Yokoi T, Tanaka T, Matsuzaka E, Tamalu F, Watanabe SI, Nishina S, Azuma N.
Effects of neuroactive agents on axonal growth and pathfinding of retinal ganglion cells generated from human stem cells.
Sci Rep
2017
7:16757
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Kawada J, Kaneda S, Kirihara T, Maroof A, Levi T, Eggan K, Fujii T, Ikeuchi Y.
Generation of a Motor Nerve Organoid with Human Stem Cell-Derived Neurons.
Stem Cell Reports
2017
9:1441-1449
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Koui Y, Kido T, Ito T, Oyama H, Chen SW, Katou Y, Shirahige K, Miyajima A.
An In Vitro Human Liver Model by iPSC-Derived Parenchymal and Non-parenchymal Cells.
Stem Cell Reports
2017
9:490-498
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Ikeda K, Nagata S, Okitsu T, Takeuchi S.
Cell fiber-based three-dimensional culture system for highly efficient expansion of human induced pluripotent stem cells.
Sci Rep
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7:2850
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Shimizu Y, Satou M, Hayashi K, Nakamura Y, Fujimaki M, Horibata Y, Ando H, Watanabe T, Shiobara T, Chibana K, Takemasa A, Sugimoto H, Anzai N, Ishii Y.
Matrix-assisted laser desorption/ionization imaging mass spectrometry reveals changes of phospholipid distribution in induced pluripotent stem cell colony differentiation.
Anal Bioanal Chem
2017
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Zuiki M, Chiyonobu T, Yoshida M, Maeda H, Yamashita S, Kidowaki S, Hasegawa T, Gotoh H, Nomura T, Ono K, Hosoi H, Morimoto M.
Luteolin attenuates interleukin-6-mediated astrogliosis in human iPSC-derived neural aggregates: A candidate preventive substance for maternal immune activation-induced abnormalities.
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